Download MendeleyDip2269 protein from corynebacterium diphtheriae.
Osipiuk, J., Duggan, E., Clancy, S., Joachimiak, A.To be published.
3V7B
Dip2269 protein from corynebacterium diphtheriae
- PDB DOI: https://doi.org/10.2210/pdb3V7B/pdb
- Entry: 3V7B supersedes: 2I8G
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Corynebacterium diphtheriae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-12-20 Released: 2012-01-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.228
- R-Value Work: 0.177
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 151 | Corynebacterium diphtheriae | Mutation(s): 0 Gene Names: DIP2269 |  | |
UniProt | |||||
Find proteins for Q6NEK4 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Explore Q6NEK4 Go to UniProtKB: Q6NEK4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NEK4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth A], D [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.228
- R-Value Work: 0.177
- R-Value Observed: 0.181
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.002 | α = 90 |
| b = 66.752 | β = 90 |
| c = 70.287 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2012-01-11 Deposition Author(s): Osipiuk, J., Duggan, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
- This entry supersedes: 2I8G
Revision History (Full details and data files)
- Version 1.0: 2012-01-11
Type: Initial release - Version 1.1: 2017-11-08
Changes: Refinement description
