Download MendeleyThe crystal structure of a flavoprotein from Sinorhizobium meliloti
Zhang, Z., Almo, S.C., Swaminathan, S.To be published.
3V76
The crystal structure of a flavoprotein from Sinorhizobium meliloti
- PDB DOI: https://doi.org/10.2210/pdb3V76/pdb
- Classification: FLAVOPROTEIN
- Organism(s): Sinorhizobium meliloti 1021
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-12-20 Released: 2012-01-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.251
- R-Value Work: 0.197
- R-Value Observed: 0.200
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Flavoprotein | 417 | Sinorhizobium meliloti 1021 | Mutation(s): 0 Gene Names: R00707, SMc00763 |  | |
UniProt | |||||
Find proteins for Q92RY0 (Rhizobium meliloti (strain 1021)) Explore Q92RY0 Go to UniProtKB: Q92RY0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92RY0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FDA Query on FDA | B [auth A] | DIHYDROFLAVINE-ADENINE DINUCLEOTIDE C27 H35 N9 O15 P2 YPZRHBJKEMOYQH-UYBVJOGSSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.251
- R-Value Work: 0.197
- R-Value Observed: 0.200
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.091 | α = 90 |
| b = 101.091 | β = 90 |
| c = 106.934 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXS | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-01-04 Deposition Author(s): Zhang, Z., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-01-04
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-12-06
Changes: Data collection
