Download MendeleyCrystal structure of a hypothetical protein (BACOVA_03105) from Bacteroides ovatus ATCC 8483 at 2.19 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3URZ
Crystal structure of a putative protein binding protein (BACOVA_03105) from Bacteroides ovatus ATCC 8483 at 2.19 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3URZ/pdb
- Classification: PROTEIN BINDING
- Organism(s): Bacteroides ovatus ATCC 8483
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-11-22 Released: 2011-12-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.240
- R-Value Work: 0.217
- R-Value Observed: 0.218
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 208 | Bacteroides ovatus ATCC 8483 | Mutation(s): 0 Gene Names: BACOVA_03105 |  | |
UniProt | |||||
Find proteins for A7LZ30 (Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)) Explore A7LZ30 Go to UniProtKB: A7LZ30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A7LZ30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | G [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], E [auth B], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSX Query on CSX | A, B | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.240
- R-Value Work: 0.217
- R-Value Observed: 0.218
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M33URZ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 30.703 | α = 90 |
| b = 41.597 | β = 92.52 |
| c = 236.878 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHARP | phasing |
| XSCALE | data scaling |
| REFMAC | refinement |
| XDS | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2011-12-14 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-12-14
Type: Initial release - Version 1.1: 2014-12-24
Changes: Structure summary - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description - Version 1.3: 2023-02-01
Changes: Database references, Derived calculations
