Download MendeleyCrystal structure of a hypothetical peroxiredoxin protein from Sinorhizobium meliloti
Eswaramoorthy, S., Almo, S.C., Swaminathan, S.To be published.
3UMA
Crystal structure of a hypothetical peroxiredoxin protein frm Sinorhizobium meliloti
- PDB DOI: https://doi.org/10.2210/pdb3UMA/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sinorhizobium meliloti
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2011-11-12 Released: 2011-11-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.241
- R-Value Work: 0.213
- R-Value Observed: 0.214
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical peroxiredoxin protein | 184 | Sinorhizobium meliloti | Mutation(s): 0 Gene Names: R00915, SMc00072 |  | |
UniProt | |||||
Find proteins for Q92RF9 (Rhizobium meliloti (strain 1021)) Explore Q92RF9 Go to UniProtKB: Q92RF9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92RF9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.241
- R-Value Work: 0.213
- R-Value Observed: 0.214
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.063 | α = 90 |
| b = 113.063 | β = 90 |
| c = 98.823 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-11-23 Deposition Author(s): Eswaramoorthy, S., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2011-11-23
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-12-06
Changes: Data collection
