Download MendeleyCrystal structure of a putative oxidoreductase from Sinorhizobium meliloti 1021
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
3U3X
Crystal structure of a putative oxidoreductase from Sinorhizobium meliloti 1021
- PDB DOI: https://doi.org/10.2210/pdb3U3X/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sinorhizobium meliloti 1021
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-10-06 Released: 2011-10-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.79 Å
- R-Value Free: 0.253
- R-Value Work: 0.199
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase | A, B [auth D], C [auth G], D [auth J], E [auth M] | 361 | Sinorhizobium meliloti 1021 | Mutation(s): 0 Gene Names: R00114, SMc04138 EC: 1 |  |
UniProt | |||||
Find proteins for Q92T66 (Rhizobium meliloti (strain 1021)) Explore Q92T66 Go to UniProtKB: Q92T66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92T66 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | F [auth A], G | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B [auth D], C [auth G], D [auth J], E [auth M] | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.79 Å
- R-Value Free: 0.253
- R-Value Work: 0.199
- R-Value Observed: 0.202
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 257.055 | α = 90 |
| b = 71.028 | β = 104.68 |
| c = 129.002 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| MOLREP | phasing |
| Coot | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-10-19 Deposition Author(s): Agarwal, R., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2011-10-19
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-12-06
Changes: Data collection
