Download MendeleyCrystal structure of a hypothtical protein SMa1452 from Sinorhizobium meliloti 1021
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
3TPC
Crystal structure of a hypothtical protein SMa1452 from Sinorhizobium meliloti 1021
- PDB DOI: https://doi.org/10.2210/pdb3TPC/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sinorhizobium meliloti
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-09-07 Released: 2011-09-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.34 Å
- R-Value Free: 0.270
- R-Value Work: 0.212
- R-Value Observed: 0.215
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short chain alcohol dehydrogenase-related dehydrogenase | 257 | Sinorhizobium meliloti | Mutation(s): 0 Gene Names: RA0792, SMa1452 |  | |
UniProt | |||||
Find proteins for Q92YS1 (Rhizobium meliloti (strain 1021)) Explore Q92YS1 Go to UniProtKB: Q92YS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92YS1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.34 Å
- R-Value Free: 0.270
- R-Value Work: 0.212
- R-Value Observed: 0.215
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.147 | α = 98.36 |
| b = 69.375 | β = 92.72 |
| c = 121.85 | γ = 113.01 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHASER | phasing |
| CCP4 | model building |
| ARP/wARP | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2011-09-28 Deposition Author(s): Agarwal, R., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2011-09-28
Type: Initial release - Version 1.1: 2011-12-21
Changes: Other - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2023-12-06
Changes: Data collection
