Download MendeleyCrystal structure of endonuclease/exonuclease/phosphatase family protein from Leptotrichia buccalis C-1013-b
Chang, C., Bigelow, L., Muniez, I., Bearden, J., Joachimiak, A.To be published.
3TEB
endonuclease/exonuclease/phosphatase family protein from Leptotrichia buccalis C-1013-b
- PDB DOI: https://doi.org/10.2210/pdb3TEB/pdb
- Classification: HYDROLASE
- Organism(s): Leptotrichia buccalis C-1013-b
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-08-12 Released: 2011-08-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.99 Å
- R-Value Free: 0.216
- R-Value Work: 0.176
- R-Value Observed: 0.178
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endonuclease/exonuclease/phosphatase | 266 | Leptotrichia buccalis C-1013-b | Mutation(s): 0 Gene Names: Lebu_1528 |  | |
UniProt | |||||
Find proteins for C7NB70 (Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b)) Explore C7NB70 Go to UniProtKB: C7NB70 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C7NB70 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A], D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.99 Å
- R-Value Free: 0.216
- R-Value Work: 0.176
- R-Value Observed: 0.178
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 206.915 | α = 90 |
| b = 206.915 | β = 90 |
| c = 89.271 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SHELXDE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| Coot | model building |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2011-08-31 Deposition Author(s): Chang, C., Bigelow, L., Muniez, I., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-08-31
Type: Initial release
