Download MendeleyCrystal structure of a putative 2-dehydro-3-deoxygalactonokinase protein from Sinorhizobium meliloti
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
3T69
Crystal structure of a putative 2-dehydro-3-deoxygalactonokinase protein from Sinorhizobium meliloti
- PDB DOI: https://doi.org/10.2210/pdb3T69/pdb
- Classification: TRANSFERASE
- Organism(s): Sinorhizobium meliloti 1021
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-07-28 Released: 2011-08-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.277
- R-Value Work: 0.217
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative 2-dehydro-3-deoxygalactonokinase | 330 | Sinorhizobium meliloti 1021 | Mutation(s): 0 Gene Names: dgoK1, R00825, SMc00881 EC: 2.7.1.58 |  | |
UniProt | |||||
Find proteins for Q92RN7 (Rhizobium meliloti (strain 1021)) Explore Q92RN7 Go to UniProtKB: Q92RN7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92RN7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth B], F [auth B], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.277
- R-Value Work: 0.217
- R-Value Observed: 0.220
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.398 | α = 90 |
| b = 109.741 | β = 90 |
| c = 121.134 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXD | phasing |
| SHARP | phasing |
| CCP4 | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2011-08-17 Deposition Author(s): Agarwal, R., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2011-08-17
Type: Initial release - Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations
