Download MendeleyThe crystal structure of Mandelate racemase/muconate lactonizing enzyme from Rhodobacteraceae bacterium
Zhang, Z., Almo, S.C., Swaminathan, S.To be published.
3SSZ
The crystal structure of Mandelate racemase/muconate lactonizing enzyme from Rhodobacteraceae bacterium
- PDB DOI: https://doi.org/10.2210/pdb3SSZ/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Rhodobacteraceae bacterium KLH11
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-07-08 Released: 2011-08-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.235
- R-Value Work: 0.183
- R-Value Observed: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein | 413 | Rhodobacteraceae bacterium KLH11 | Mutation(s): 0 Gene Names: RKLH11_3829 |  | |
UniProt | |||||
Find proteins for B9NY46 (Rhodobacteraceae bacterium KLH11) Explore B9NY46 Go to UniProtKB: B9NY46 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B9NY46 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.235
- R-Value Work: 0.183
- R-Value Observed: 0.186
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 136.777 | α = 90 |
| b = 136.777 | β = 90 |
| c = 116.283 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-08-17 Deposition Author(s): Zhang, Z., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., LaFleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2011-08-17
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
