Download MendeleyCrystal structure of uncharacterized protein Svir_20580 from Saccharomonospora viridis
Michalska, K., Weger, A., Hatzos-Skintges, C., Bearden, J., Joachimiak, A.To be published.
3RMS
Crystal structure of uncharacterized protein Svir_20580 from Saccharomonospora viridis
- PDB DOI: https://doi.org/10.2210/pdb3RMS/pdb
- Classification: Structural Genomics, unknown function
- Organism(s): Saccharomonospora viridis DSM 43017
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2011-04-21 Released: 2011-05-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.205
- R-Value Work: 0.177
- R-Value Observed: 0.178
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | 116 | Saccharomonospora viridis DSM 43017 | Mutation(s): 0 Gene Names: Svir_20580 |  | |
UniProt | |||||
Find proteins for C7MVX3 (Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)) Explore C7MVX3 Go to UniProtKB: C7MVX3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C7MVX3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A] G [auth B] H [auth B] I [auth B] J [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | D [auth A], F [auth B], K [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.205
- R-Value Work: 0.177
- R-Value Observed: 0.178
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.63 | α = 90 |
| b = 60.968 | β = 96.77 |
| c = 73.209 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-05-11 Deposition Author(s): Michalska, K., Weger, A., Hatzos-Skintges, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-05-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-12-06
Changes: Data collection
