Download MendeleyCrystal Strucutre of Histidine--tRNA ligase subunit from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446.
Wu, R., Bedean, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
3RAC
Crystal Structure of Histidine--tRNA ligase subunit from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446.
- PDB DOI: https://doi.org/10.2210/pdb3RAC/pdb
- Classification: LIGASE
- Organism(s): Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2011-03-27 Released: 2011-09-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.239
- R-Value Work: 0.189
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histidine-tRNA ligase | 373 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 | Mutation(s): 0 Gene Names: Aaci_0923 EC: 6.1.1.21 |  | |
UniProt | |||||
Find proteins for C8WUX4 (Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-IA)) Explore C8WUX4 Go to UniProtKB: C8WUX4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C8WUX4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LMR Query on LMR | B [auth A] | (2S)-2-hydroxybutanedioic acid C4 H6 O5 BJEPYKJPYRNKOW-REOHCLBHSA-N |  | ||
| GOL Query on GOL | G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | E [auth A], F [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A], D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.239
- R-Value Work: 0.189
- R-Value Observed: 0.192
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.276 | α = 90 |
| b = 69.276 | β = 90 |
| c = 177.643 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| MLPHARE | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-09-14 Deposition Author(s): Wu, R., Bedean, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-09-14
Type: Initial release - Version 1.1: 2012-09-12
Changes: Database references, Structure summary - Version 1.2: 2020-09-09
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references
