Download MendeleyCrystal structure of orotidine 5'-phosphate decarboxylase from Anaerococcus prevotii DSM 20548
Chang, C., Tesar, C., Bearden, J., Joachimiak, A.To be published.
3R89
Crystal structure of orotidine 5-phosphate decarboxylase from Anaerococcus prevotii DSM 20548
- PDB DOI: https://doi.org/10.2210/pdb3R89/pdb
- Classification: LYASE
- Organism(s): Anaerococcus prevotii DSM 20548
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-03-23 Released: 2011-04-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.197
- R-Value Work: 0.158
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Orotidine 5'-phosphate decarboxylase | 290 | Anaerococcus prevotii DSM 20548 | Mutation(s): 0 Gene Names: pyrF, Apre_0783 EC: 4.1.1.23 |  | |
UniProt | |||||
Find proteins for C7RH50 (Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / NCTC 11806 / PC1)) Explore C7RH50 Go to UniProtKB: C7RH50 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C7RH50 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.197
- R-Value Work: 0.158
- R-Value Observed: 0.160
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.507 | α = 90 |
| b = 108.848 | β = 90 |
| c = 138.171 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SHELXDE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2011-04-06 Deposition Author(s): Chang, C., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-04-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
