3QPX

Crystal structure of Fab C2507

PDB DOI: https://doi.org/10.2210/pdb3QPX/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens, Rattus norvegicus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2011-02-14 Released: 2011-08-10
Deposition Author(s): Luo, J., Teplyakov, A., Obmolova, O., Malia, T., Gilliland, G.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.264
R-Value Work: 0.225
R-Value Observed: 0.227

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Fab C2507

Luo, J., Teplyakov, A., Obmolova, O., Malia, T., Gilliland, G.L.

To be published.

Macromolecule Content

Total Structure Weight: 50.49 kDa
Atom Count: 3,921
Modelled Residue Count: 441
Deposited Residue Count: 441
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab C2507 light chain	A [auth L]	213	Homo sapiens, Rattus norvegicus This entity is chimeric	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab C2507 heavy chain	B [auth H]	228	Homo sapiens, Rattus norvegicus This entity is chimeric	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CD Query on CD Download Ideal Coordinates CCD File SDF format, chain BA [auth H] SDF format, chain CA [auth H] SDF format, chain DA [auth H] SDF format, chain O [auth L] SDF format, chain P [auth L] SDF format, chain Q [auth L] MOL2 format, chain BA [auth H] MOL2 format, chain CA [auth H] MOL2 format, chain DA [auth H] MOL2 format, chain O [auth L] MOL2 format, chain P [auth L] MOL2 format, chain Q [auth L]	BA [auth H] CA [auth H] DA [auth H] O [auth L] P [auth L] BA [auth H], CA [auth H], DA [auth H], O [auth L], P [auth L], Q [auth L]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N		Interactions Focus chain BA [auth H] Focus chain CA [auth H] Focus chain DA [auth H] Focus chain O [auth L] Focus chain P [auth L] Focus chain Q [auth L] Interactions & Density Focus chain BA [auth H] Focus chain CA [auth H] Focus chain DA [auth H] Focus chain O [auth L] Focus chain P [auth L] Focus chain Q [auth L]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth L] SDF format, chain D [auth L] SDF format, chain E [auth L] SDF format, chain F [auth L] SDF format, chain S [auth H] SDF format, chain T [auth H] SDF format, chain U [auth H] SDF format, chain V [auth H] SDF format, chain W [auth H] SDF format, chain X [auth H] SDF format, chain Y [auth H] MOL2 format, chain C [auth L] MOL2 format, chain D [auth L] MOL2 format, chain E [auth L] MOL2 format, chain F [auth L] MOL2 format, chain S [auth H] MOL2 format, chain T [auth H] MOL2 format, chain U [auth H] MOL2 format, chain V [auth H] MOL2 format, chain W [auth H] MOL2 format, chain X [auth H] MOL2 format, chain Y [auth H]	C [auth L] D [auth L] E [auth L] F [auth L] S [auth H] C [auth L], D [auth L], E [auth L], F [auth L], S [auth H], T [auth H], U [auth H], V [auth H], W [auth H], X [auth H], Y [auth H]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth L] Focus chain D [auth L] Focus chain E [auth L] Focus chain F [auth L] Focus chain S [auth H] Focus chain T [auth H] Focus chain U [auth H] Focus chain V [auth H] Focus chain W [auth H] Focus chain X [auth H] Focus chain Y [auth H] Interactions & Density Focus chain C [auth L] Focus chain D [auth L] Focus chain E [auth L] Focus chain F [auth L] Focus chain S [auth H] Focus chain T [auth H] Focus chain U [auth H] Focus chain V [auth H] Focus chain W [auth H] Focus chain X [auth H] Focus chain Y [auth H]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain AA [auth H] SDF format, chain G [auth L] SDF format, chain H [auth L] SDF format, chain I [auth L] SDF format, chain J [auth L] SDF format, chain K [auth L] SDF format, chain L SDF format, chain M [auth L] SDF format, chain N [auth L] SDF format, chain Z [auth H] MOL2 format, chain AA [auth H] MOL2 format, chain G [auth L] MOL2 format, chain H [auth L] MOL2 format, chain I [auth L] MOL2 format, chain J [auth L] MOL2 format, chain K [auth L] MOL2 format, chain L MOL2 format, chain M [auth L] MOL2 format, chain N [auth L] MOL2 format, chain Z [auth H]	AA [auth H] G [auth L] H [auth L] I [auth L] J [auth L] AA [auth H], G [auth L], H [auth L], I [auth L], J [auth L], K [auth L], L, M [auth L], N [auth L], Z [auth H]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth H] Focus chain G [auth L] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth L] Focus chain L Focus chain M [auth L] Focus chain N [auth L] Focus chain Z [auth H] Interactions & Density Focus chain AA [auth H] Focus chain G [auth L] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth L] Focus chain L Focus chain M [auth L] Focus chain N [auth L] Focus chain Z [auth H]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain R [auth L] MOL2 format, chain R [auth L]	R [auth L]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain R [auth L] Interactions & Density Focus chain R [auth L]