Download MendeleyCrystal structure of Rubisco-like protein from Rhodopseudomonas palustris
Fedorov, A.A., Fedorov, E.V., Gerlt, J.A., Burley, S.K., Almo, S.C.To be published.
3QFW
Crystal structure of Rubisco-like protein from Rhodopseudomonas palustris
- PDB DOI: https://doi.org/10.2210/pdb3QFW/pdb
- Classification: LYASE
- Organism(s): Rhodopseudomonas palustris BisB18
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-01-23 Released: 2011-02-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free: 0.284
- R-Value Work: 0.244
- R-Value Observed: 0.246
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | 378 | Rhodopseudomonas palustris BisB18 | Mutation(s): 0 Gene Names: RPC_2184 EC: 4.1.1.39 |  | |
UniProt | |||||
Find proteins for Q216E8 (Rhodopseudomonas palustris (strain BisB18)) Explore Q216E8 Go to UniProtKB: Q216E8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q216E8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free: 0.284
- R-Value Work: 0.244
- R-Value Observed: 0.246
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.44 | α = 90 |
| b = 119.217 | β = 115.46 |
| c = 66.856 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2011-02-09 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Gerlt, J.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2011-02-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references
