Download MendeleyStructure of NAD synthetase from Vibrio cholerae
Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
3Q4G
Structure of NAD synthetase from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb3Q4G/pdb
- Classification: LIGASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2010-12-23 Released: 2011-01-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.215
- R-Value Work: 0.171
- R-Value Observed: 0.173
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NH(3)-dependent NAD(+) synthetase | 279 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 1 Gene Names: nadE, VCD_000045 EC: 6.3.1.5 |  | |
UniProt | |||||
Find proteins for Q9KMW1 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KMW1 Go to UniProtKB: Q9KMW1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KMW1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A], D [auth A], E [auth A], F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.215
- R-Value Work: 0.171
- R-Value Observed: 0.173
- Space Group: P 32 2 1
- Diffraction Data: https://doi.org/10.18430/M33Q4G
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.426 | α = 90 |
| b = 93.426 | β = 90 |
| c = 165.297 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| BLU-MAX | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2011-01-26 Deposition Author(s): Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-01-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2014-10-08
Changes: Database references - Version 1.3: 2014-11-12
Changes: Structure summary
