Download MendeleyThe crystal structure of YceI-like family protein from Pseudomonas syringae
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3Q34
The crystal structure of YceI-like family protein from Pseudomonas syringae
- PDB DOI: https://doi.org/10.2210/pdb3Q34/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Pseudomonas savastanoi pv. phaseolicola 1448A
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2010-12-21 Released: 2011-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.207
- R-Value Work: 0.170
- R-Value Observed: 0.172
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YceI-like family protein | 184 | Pseudomonas savastanoi pv. phaseolicola 1448A | Mutation(s): 0 Gene Names: PSPPH_4050 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for Q48EL2 (Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)) Explore Q48EL2 Go to UniProtKB: Q48EL2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q48EL2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UQ8 Query on UQ8 | E [auth A], G [auth B], I [auth C], J [auth D] | Ubiquinone-8 C49 H74 O4 ICFIZJQGJAJRSU-SGHXUWJISA-N |  | ||
| GOL Query on GOL | F [auth A], H [auth B], K [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.207
- R-Value Work: 0.170
- R-Value Observed: 0.172
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.647 | α = 90 |
| b = 103.357 | β = 109.04 |
| c = 63.193 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SOLVE | phasing |
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2011-02-23 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2011-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
