3PHO
Crystal structure of S64-4 in complex with PSBP
- PDB DOI: https://doi.org/10.2210/pdb3PHO/pdb
- Classification: CARBOHYDRATE-BINDING PROTEIN
- Organism(s): Mus musculus
- Mutation(s): No 
- Deposited: 2010-11-04 Released: 2011-05-18 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.275 
- R-Value Work: 0.219 
- R-Value Observed: 0.222 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
S64-4 Fab (IgG1) light chain | 217 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
S64-4 Fab (IgG1) heavy chain | 222 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2-deoxy-4-O-phosphono-beta-D-glucopyranose | C | 4 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G91884QJ GlyCosmos:  G91884QJ |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.275 
- R-Value Work: 0.219 
- R-Value Observed: 0.222 
- Space Group: P 63
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 163.36 | α = 90 |
b = 163.36 | β = 90 |
c = 43.04 | γ = 120 |
Software Name | Purpose |
---|---|
d*TREK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CrystalClear | data collection |
CrystalClear | data reduction |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2011-05-18  Deposition Author(s): Evans, D.W., Evans, S.V.
Revision History (Full details and data files)
- Version 1.0: 2011-05-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-07-27
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary