Download MendeleyStructure of Rana pipiens wild-type onconase at resolution 1.46 A
Kurpiewska, K., Torrent, G., Ribo, M., Vilanova, M., Loch, J., Lewinski, K.To be published.
3PHN
Crystal structure of wild-type onconase with resolution 1.46 A
- PDB DOI: https://doi.org/10.2210/pdb3PHN/pdb
- Classification: HYDROLASE, ANTITUMOR PROTEIN
- Organism(s): Lithobates pipiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-11-04 Released: 2010-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.199
- R-Value Work: 0.150
- R-Value Observed: 0.152
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein P-30 | 104 | Lithobates pipiens | Mutation(s): 0 EC: 3.1.27 |  | |
UniProt | |||||
Find proteins for P22069 (Lithobates pipiens) Explore P22069 Go to UniProtKB: P22069 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22069 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 |  | GLN |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.46 Å
- R-Value Free: 0.199
- R-Value Work: 0.150
- R-Value Observed: 0.152
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.23 | α = 90 |
| b = 38.679 | β = 90 |
| c = 69.588 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CrysalisPro | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| CrysalisPro | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-11-17 Deposition Author(s): Kurpiewska, K., Torrent, G., Ribo, M., Vilanova, M., Loch, J., Lewinski, K.
Revision History (Full details and data files)
- Version 1.0: 2010-11-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-04-04
Changes: Data collection - Version 2.0: 2019-12-25
Changes: Derived calculations, Polymer sequence - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
