Download MendeleyCrystal structure of the Nup53 RRM domain from Pichia guilliermondii
Sampathkumar, P.To be published.
3P3D
Crystal structure of the Nup53 RRM domain from Pichia guilliermondii
- PDB DOI: https://doi.org/10.2210/pdb3P3D/pdb
- Classification: NUCLEAR PROTEIN
- Organism(s): Meyerozyma guilliermondii
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-10-04 Released: 2011-01-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.288
- R-Value Work: 0.238
- R-Value Observed: 0.245
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nucleoporin 53 | 132 | Meyerozyma guilliermondii | Mutation(s): 0 Gene Names: NUP53 (gi146415668), PGUG_04532 |  | |
UniProt | |||||
Find proteins for A5DMN1 (Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)) Explore A5DMN1 Go to UniProtKB: A5DMN1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5DMN1 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.288
- R-Value Work: 0.238
- R-Value Observed: 0.245
- Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.507 | α = 90 |
| b = 62.507 | β = 90 |
| c = 55.117 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2011-01-19 Deposition Author(s): Sampathkumar, P., Shawn, C., Bain, K., Gilmore, J., Gheyi, T., Atwell, S., Thompson, D.A., Emtage, J.S., Wasserman, S., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2011-01-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Structure summary - Version 1.4: 2023-09-06
Changes: Data collection, Database references, Refinement description
