Download MendeleyCrystal structure of glycine cleavage system protein H from Bartonella henselae
Edwards, T.E., Gardberg, A.S., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3MXU
Crystal structure of glycine cleavage system protein H from Bartonella henselae
- PDB DOI: https://doi.org/10.2210/pdb3MXU/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bartonella henselae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-05-07 Released: 2010-05-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.196
- R-Value Work: 0.176
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycine cleavage system H protein | 143 | Bartonella henselae | Mutation(s): 0 Gene Names: gcvH, BH12830 |  | |
UniProt | |||||
Find proteins for Q6G2F0 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore Q6G2F0 Go to UniProtKB: Q6G2F0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6G2F0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | B [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.196
- R-Value Work: 0.176
- R-Value Observed: 0.177
- Space Group: H 3 2
- Diffraction Data: https://doi.org/10.18430/M33MXU
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.91 | α = 90 |
| b = 98.91 | β = 90 |
| c = 131.54 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2010-05-26 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-05-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
