Download MendeleyThe crystal structure of an amidohydrolase from Mycoplasma synoviae
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3MSR
The crystal structure of an amidohydrolase from Mycoplasma synoviae
- PDB DOI: https://doi.org/10.2210/pdb3MSR/pdb
- Classification: HYDROLASE
- Organism(s): Mycoplasmopsis synoviae 53
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-04-29 Released: 2010-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.16 Å
- R-Value Free: 0.192
- R-Value Work: 0.150
- R-Value Observed: 0.152
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| amidohydrolases | 363 | Mycoplasmopsis synoviae 53 | Mutation(s): 0 Gene Names: HAD, MS53_0025 |  | |
UniProt | |||||
Find proteins for Q4A724 (Mycoplasmopsis synoviae (strain 53)) Explore Q4A724 Go to UniProtKB: Q4A724 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4A724 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.16 Å
- R-Value Free: 0.192
- R-Value Work: 0.150
- R-Value Observed: 0.152
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 111.248 | α = 90 |
| b = 111.248 | β = 90 |
| c = 138.308 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SOLVE | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-05-12 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
