Download MendeleyCrystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase from Brucella melitensis, rhombohedral crystal form
Abendroth, J., Gardberg, A.S., Staker, B.To be published.
3MDX
Crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase from Brucella melitensis, rhombohedral crystal form
- PDB DOI: https://doi.org/10.2210/pdb3MDX/pdb
- Classification: HYDROLASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-03-31 Released: 2010-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.167
- R-Value Work: 0.150
- R-Value Observed: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Deoxyuridine 5'-triphosphate nucleotidohydrolase | 178 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: dut, BAB1_1687 EC: 3.6.1.23 |  | |
UniProt | |||||
Find proteins for Q2YRG4 (Brucella abortus (strain 2308)) Explore Q2YRG4 Go to UniProtKB: Q2YRG4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YRG4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.167
- R-Value Work: 0.150
- R-Value Observed: 0.151
- Space Group: H 3
- Diffraction Data: https://doi.org/10.18430/M33MDX
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.88 | α = 90 |
| b = 67.88 | β = 90 |
| c = 95.89 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2010-04-21 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-04-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
