Download MendeleyCrystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris
Bonanno, J.B., Freeman, J., Bain, K.T., Do, J., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3KGZ
Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris
- PDB DOI: https://doi.org/10.2210/pdb3KGZ/pdb
- Classification: Structural Genomics, Unknown function
- Organism(s): Rhodopseudomonas palustris TIE-1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-10-29 Released: 2009-11-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.248
- R-Value Work: 0.199
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cupin 2 conserved barrel domain protein | 156 | Rhodopseudomonas palustris TIE-1 | Mutation(s): 0 Gene Names: Rpal_2463 |  | |
UniProt | |||||
Find proteins for B3QER1 (Rhodopseudomonas palustris (strain TIE-1)) Explore B3QER1 Go to UniProtKB: B3QER1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B3QER1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | C [auth A], D [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.248
- R-Value Work: 0.199
- R-Value Observed: 0.202
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.854 | α = 90 |
| b = 80.382 | β = 90 |
| c = 110.081 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2009-11-24 Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Do, J., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-11-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
