Download MendeleyQuaternary structural variability in rat hemoglobin
Neelagandan, K., Sathya Moorthy, P., Balasubramanian, M., Ponnuswamy, M.N.To be published.
3HF4
Crystal structure of rat methemoglobin in R2 state
- PDB DOI: https://doi.org/10.2210/pdb3HF4/pdb
- Classification: OXYGEN STORAGE, OXYGEN TRANSPORT
- Organism(s): Rattus norvegicus
- Mutation(s): No
- Deposited: 2009-05-11 Released: 2010-05-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.275
- R-Value Work: 0.213
- R-Value Observed: 0.219
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit alpha-1/2 | A, C [auth E] | 141 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P01946 (Rattus norvegicus) Explore P01946 Go to UniProtKB: P01946 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01946 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin subunit beta-1 | B, D [auth F] | 146 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P02091 (Rattus norvegicus) Explore P02091 Go to UniProtKB: P02091 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02091 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | E [auth A], F [auth B], G [auth E], H [auth F] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.275
- R-Value Work: 0.213
- R-Value Observed: 0.219
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.14 | α = 90 |
| b = 54.015 | β = 93.8 |
| c = 115.008 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| AUTOMAR | data reduction |
Entry History
Deposition Data
- Released Date: 2010-05-19 Deposition Author(s): Neelagandan, K., Sathya Moorthy, P., Balasubramanian, M., Ponnuswamy, M.N.
Revision History (Full details and data files)
- Version 1.0: 2010-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-01-31
Changes: Experimental preparation - Version 1.4: 2018-06-20
Changes: Data collection, Database references, Structure summary - Version 1.5: 2020-01-15
Changes: Advisory, Derived calculations - Version 1.6: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
