Download MendeleyCrystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei in complex with 9-beta-D-arabino-furansyl-adenine
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3GLQ
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei in complex with 9-beta-D-arabino-furansyl-adenine
- PDB DOI: https://doi.org/10.2210/pdb3GLQ/pdb
- Classification: HYDROLASE
- Organism(s): Burkholderia pseudomallei 1710b
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-12 Released: 2009-03-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.196
- R-Value Work: 0.149
- R-Value Observed: 0.152
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenosylhomocysteinase | 494 | Burkholderia pseudomallei 1710b | Mutation(s): 0 Gene Names: ahcY, BURPS1710b_0057 EC: 3.3.1.1 |  | |
UniProt | |||||
Find proteins for Q3JY79 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JY79 Go to UniProtKB: Q3JY79 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JY79 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | C [auth A], E [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| RAB Query on RAB | D [auth A], F [auth B] | 2-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL C10 H13 N5 O4 OIRDTQYFTABQOQ-UHTZMRCNSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.196
- R-Value Work: 0.149
- R-Value Observed: 0.152
- Space Group: P 41 21 2
- Diffraction Data: https://doi.org/10.18430/M33GLQ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.9 | α = 90 |
| b = 86.9 | β = 90 |
| c = 318.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| StructureStudio | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2009-03-24 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-03-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
