3EQE

Crystal structure of the YubC protein from Bacillus subtilis. Northeast Structural Genomics Consortium target SR112.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.241 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 4QM8


Literature

Crystal structure of the YubC protein from Bacillus subtilis.

Vorobiev, S.M.Su, M.Seetharaman, J.Benach, J.Forouhar, F.Clayton, G.Cooper, B.Wang, H.Foote, E.L.Ciccosanti, C.Mao, L.Xiao, R.Acton, T.B.Montelione, G.T.Hunt, J.F.Tong, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative cystein dioxygenase
A, B
171Bacillus subtilisMutation(s): 0 
Gene Names: BSU31140yubC
EC: 1.13.11
UniProt
Find proteins for O32085 (Bacillus subtilis (strain 168))
Explore O32085 
Go to UniProtKB:  O32085
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO32085
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.241 
  • Space Group: P 43 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.83α = 90
b = 65.83β = 90
c = 197.19γ = 90
Software Package:
Software NamePurpose
SHELXDEphasing
CNSrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Author supporting evidence