Download MendeleyCrystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.
Ramagopal, U.A., Toro, R., Dickey, M., Tang, B.K., Groshong, C., Rodgers, L., Burley, S.K., Almo, S.C.To be published.
3EPR
Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.
- PDB DOI: https://doi.org/10.2210/pdb3EPR/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus agalactiae serogroup V
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-29 Released: 2008-11-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.209
- R-Value Work: 0.179
- R-Value Observed: 0.180
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hydrolase, haloacid dehalogenase-like family | 264 | Streptococcus agalactiae serogroup V | Mutation(s): 0 Gene Names: SAG0892 |  | |
UniProt | |||||
Find proteins for Q8E044 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)) Explore Q8E044 Go to UniProtKB: Q8E044 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8E044 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.209
- R-Value Work: 0.179
- R-Value Observed: 0.180
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.367 | α = 90 |
| b = 82.954 | β = 90 |
| c = 99.604 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXE | model building |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2008-11-04 Deposition Author(s): Ramagopal, U.A., Toro, R., Dickey, M., Tang, B.K., Groshong, C., Rodgers, L., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-11-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
