Download MendeleyCrystal structures of isocitrate lyase from Brucella melitensis
SSGCIDTo be published.
3EOL
2.0A crystal structure of isocitrate lyase from Brucella melitensis (P43212)
- PDB DOI: https://doi.org/10.2210/pdb3EOL/pdb
- Classification: LYASE
- Organism(s): Brucella melitensis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-28 Released: 2008-10-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.263
- R-Value Work: 0.221
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| isocitrate lyase | 433 | Brucella melitensis | Mutation(s): 0 Gene Names: BMEI0409 EC: 4.1.3.1 |  | |
UniProt | |||||
Find proteins for Q2YQA0 (Brucella abortus (strain 2308)) Explore Q2YQA0 Go to UniProtKB: Q2YQA0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YQA0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | D [auth B], E [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.263
- R-Value Work: 0.221
- R-Value Observed: 0.223
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.702 | α = 90 |
| b = 79.702 | β = 90 |
| c = 281.595 | γ = 90 |
| Software Name | Purpose |
|---|---|
| d*TREK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2008-10-21 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2008-10-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
