Download MendeleyCrystal structure of a putative mandelate racemase/muconate lactonizing enzyme from Silicibacter pomeroyi
Bonanno, J.B., Rutter, M., Bain, K.T., Hu, S., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3EEZ
Crystal structure of a putative mandelate racemase/muconate lactonizing enzyme from Silicibacter pomeroyi
- PDB DOI: https://doi.org/10.2210/pdb3EEZ/pdb
- Classification: ISOMERASE
- Organism(s): Ruegeria pomeroyi
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2008-09-07 Released: 2008-09-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.279
- R-Value Work: 0.228
- R-Value Observed: 0.231
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative Mandelate racemase/muconate lactonizing enzyme | 378 | Ruegeria pomeroyi | Mutation(s): 2 Gene Names: SPO1594 |  | |
UniProt | |||||
Find proteins for Q5LT20 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LT20 Go to UniProtKB: Q5LT20 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5LT20 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.279
- R-Value Work: 0.228
- R-Value Observed: 0.231
- Space Group: P 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.626 | α = 90 |
| b = 110.626 | β = 90 |
| c = 120.272 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-30 Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Hu, S., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-09-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Structure summary - Version 1.5: 2021-10-20
Changes: Database references - Version 1.6: 2023-08-30
Changes: Data collection, Refinement description
