Download MendeleyFunded by the national institute of allergy and infectious diseases of nih (contract number hhsn272200700058c).
Singer, A.U., Skarina, T., Onopriyenko, O., Edwards, A.M., Anderson, W.F., Savchenko, A.To be published.
3DR6
Structure of yncA, a putative ACETYLTRANSFERASE from Salmonella typhimurium
- PDB DOI: https://doi.org/10.2210/pdb3DR6/pdb
- Classification: TRANSFERASE
- Organism(s): Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-10 Released: 2008-09-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.200
- R-Value Work: 0.163
- R-Value Observed: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| yncA | 174 | N/A | Mutation(s): 0 Gene Names: yncA EC: 2.3.1 |  | |
UniProt | |||||
Find proteins for Q8ZPD3 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZPD3 Go to UniProtKB: Q8ZPD3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZPD3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | J [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A] E [auth A] F [auth A] G [auth B] H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.200
- R-Value Work: 0.163
- R-Value Observed: 0.165
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M33DR6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 162.898 | α = 90 |
| b = 70.229 | β = 102.64 |
| c = 59.157 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-09 Deposition Author(s): Singer, A.U., Skarina, T., Onopriyenko, O., Edwards, A.M., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2008-09-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-11-15
Changes: Data collection
