Download MendeleyCrystal Structure of Malate Dehydrogenase from Burkholderia pseudomallei.
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3D5T
Crystal structure of malate dehydrogenase from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3D5T/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia pseudomallei 1710b
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-05-16 Released: 2008-06-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.241
- R-Value Work: 0.178
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Malate dehydrogenase | 331 | Burkholderia pseudomallei 1710b | Mutation(s): 0 Gene Names: mdh, BURPS1710b_A0795 EC: 1.1.1.37 |  | |
UniProt | |||||
Find proteins for Q3JKE9 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JKE9 Go to UniProtKB: Q3JKE9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JKE9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| NA Query on NA | E [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.241
- R-Value Work: 0.178
- R-Value Observed: 0.181
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.387 | α = 90 |
| b = 79.608 | β = 90 |
| c = 288.874 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
Entry History
Deposition Data
- Released Date: 2008-06-03 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2008-06-03
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description
