3BUA

Crystal Structure of TRF2 TRFH domain and APOLLO peptide complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.229 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A shared docking motif in TRF1 and TRF2 used for differential recruitment of telomeric proteins.

Chen, Y.Yang, Y.van Overbeek, M.Donigian, J.R.Baciu, P.de Lange, T.Lei, M.

(2008) Science 319: 1092-1096

  • DOI: https://doi.org/10.1126/science.1151804
  • Primary Citation of Related Structures:  
    3BQO, 3BU8, 3BUA

  • PubMed Abstract: 

    Mammalian telomeres are protected by a six-protein complex: shelterin. Shelterin contains two closely related proteins (TRF1 and TRF2), which recruit various proteins to telomeres. We dissect the interactions of TRF1 and TRF2 with their shared binding partner (TIN2) and other shelterin accessory factors. TRF1 recognizes TIN2 using a conserved molecular surface in its TRF homology (TRFH) domain. However, this same surface does not act as a TIN2 binding site in TRF2, and TIN2 binding to TRF2 is mediated by a region outside the TRFH domain. Instead, the TRFH docking site of TRF2 binds a shelterin accessory factor (Apollo), which does not interact with the TRFH domain of TRF1. Conversely, the TRFH domain of TRF1, but not of TRF2, interacts with another shelterin-associated factor: PinX1.


  • Organizational Affiliation

    Department of Biological Chemistry, University of Michigan Medical School, 1150 West Medical Center Drive, Ann Arbor, MI 48109, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Telomeric repeat-binding factor 2
A, B, C, D
204Homo sapiensMutation(s): 0 
Gene Names: TERF2TRBF2TRF2
UniProt & NIH Common Fund Data Resources
Find proteins for Q15554 (Homo sapiens)
Explore Q15554 
Go to UniProtKB:  Q15554
PHAROS:  Q15554
GTEx:  ENSG00000132604 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15554
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA cross-link repair 1B protein
E, F, G, H
36Homo sapiensMutation(s): 0 
Gene Names: DCLRE1BSNM1B
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H816 (Homo sapiens)
Explore Q9H816 
Go to UniProtKB:  Q9H816
PHAROS:  Q9H816
GTEx:  ENSG00000118655 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H816
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.229 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.947α = 90
b = 109.947β = 90
c = 130.83γ = 120
Software Package:
Software NamePurpose
Locallydata collection
PHASERphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-02-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-08-30
    Changes: Data collection, Database references, Refinement description