Download MendeleyNovel Antibiotics Target Protein of Gram-positive Pathogens: X-ray Crystal Structures and Search of Potential Drug-Binding sites
Doi, A., Okajima, T., Gotoh, Y., Tanizawa, K., Utsumi, R.To be published.
2ZWM
Crystal structure of YycF receiver domain from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb2ZWM/pdb
- Classification: TRANSCRIPTION
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-12-16 Released: 2009-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.230
- R-Value Work: 0.194
- R-Value Observed: 0.195
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulatory protein yycF | 130 | Bacillus subtilis | Mutation(s): 0 Gene Names: yycF |  | |
UniProt | |||||
Find proteins for P37478 (Bacillus subtilis (strain 168)) Explore P37478 Go to UniProtKB: P37478 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P37478 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth B], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.230
- R-Value Work: 0.194
- R-Value Observed: 0.195
- Space Group: P 31
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.824 | α = 90 |
| b = 58.824 | β = 90 |
| c = 78.247 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-14 Deposition Author(s): Doi, A., Okajima, T., Utsumi, R.
Revision History (Full details and data files)
- Version 1.0: 2009-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
