Download MendeleyCrystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
Kanagawa, M., Minami, Y., Watanabe, N., Yokoyama, S., Kuramitsu, S.To be published.
2YZQ
Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
- PDB DOI: https://doi.org/10.2210/pdb2YZQ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Pyrococcus horikoshii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-05-06 Released: 2007-11-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.243
- R-Value Work: 0.225
- R-Value Observed: 0.225
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein PH1780 | 282 | Pyrococcus horikoshii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O59416 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59416 Go to UniProtKB: O59416 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O59416 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAM Query on SAM | B [auth A] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.243
- R-Value Work: 0.225
- R-Value Observed: 0.225
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.753 | α = 90 |
| b = 75.008 | β = 119.53 |
| c = 49.661 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-06 Deposition Author(s): Kanagawa, M., Minami, Y., Watanabe, N., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-11-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
