Download MendeleyCrystal structure of peroxiredoxin-like protein from Sulfolobus tokodaii
Ebihara, A., Manzoku, M., Fujimoto, Y., Yokoyama, S., Kuramitsu, S.To be published.
2YWN
Crystal structure of peroxiredoxin-like protein from Sulfolobus tokodaii
- PDB DOI: https://doi.org/10.2210/pdb2YWN/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sulfurisphaera tokodaii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-04-20 Released: 2007-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.221
- R-Value Work: 0.200
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 4G2E
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peroxiredoxin-like protein | 157 | Sulfurisphaera tokodaii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for F9VNL8 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore F9VNL8 Go to UniProtKB: F9VNL8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F9VNL8 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.221
- R-Value Work: 0.200
- R-Value Observed: 0.200
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.34 | α = 90 |
| b = 78.67 | β = 90 |
| c = 61.97 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-23 Deposition Author(s): Ebihara, A., Manzoku, M., Fujimoto, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-10-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-11
Changes: Refinement description - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description
