Download MendeleyConformational Changes in the Catalytic Domain of the Cpx-ATPase Copb-B Upon Nucleotide Binding
Voellmecke, C., Schlicker, C., Luebben, M., Hofmann, E.To be published.
2YJ3
Conformational changes in the catalytic domain of the CPx-ATPase CopB- B upon nucleotide binding
- PDB DOI: https://doi.org/10.2210/pdb2YJ3/pdb
- Classification: HYDROLASE
- Organism(s): Saccharolobus solfataricus P2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2011-05-18 Released: 2012-05-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.284
- R-Value Work: 0.219
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| COPPER-TRANSPORTING ATPASE | 263 | Saccharolobus solfataricus P2 | Mutation(s): 1 EC: 3.6.3.10 |  | |
UniProt | |||||
Find proteins for Q97UU7 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97UU7 Go to UniProtKB: Q97UU7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q97UU7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | B [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.284
- R-Value Work: 0.219
- R-Value Observed: 0.223
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.98 | α = 90 |
| b = 52.59 | β = 90 |
| c = 68.79 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2012-05-30 Deposition Author(s): Voellmecke, C., Schlicker, C., Luebben, M., Hofmann, E.
Revision History (Full details and data files)
- Version 1.0: 2012-05-30
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
