Download MendeleyCaspase-8 in Complex with Darpin-8.4
Schroeder, T., Barandun, J., Grutter, M.G.To be published.
2Y1L
Caspase-8 in Complex with DARPin-8.4
- PDB DOI: https://doi.org/10.2210/pdb2Y1L/pdb
- Classification: HYDROLASE/INHIBITOR
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli BL21(DE3), Escherichia coli K-12
- Mutation(s): No
- Deposited: 2010-12-08 Released: 2011-12-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.218
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CASPASE-8 | 159 | Homo sapiens | Mutation(s): 0 EC: 3.4.22.61 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14790 (Homo sapiens) Explore Q14790 Go to UniProtKB: Q14790 | |||||
PHAROS: Q14790 GTEx: ENSG00000064012 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q14790 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CASPASE-8 | 104 | Homo sapiens | Mutation(s): 0 EC: 3.4.22.61 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14790 (Homo sapiens) Explore Q14790 Go to UniProtKB: Q14790 | |||||
PHAROS: Q14790 GTEx: ENSG00000064012 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q14790 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DARPIN-8.4 | 169 | synthetic construct | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AC-IETD-CHO | 4 | synthetic construct | Mutation(s): 0 |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | I [auth A], K [auth B], L [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | J [auth B], M [auth D], N [auth E], O [auth F], P [auth F] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.218
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61 | α = 90 |
| b = 81.6 | β = 90 |
| c = 163.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2011-12-28 Deposition Author(s): Barandun, J., Schroeder, T., Mittl, P.R.E., Grutter, M.G.
Revision History (Full details and data files)
- Version 1.0: 2011-12-28
Type: Initial release - Version 1.1: 2012-04-11
Changes: Other - Version 1.2: 2012-10-03
Changes: Derived calculations - Version 1.3: 2014-03-12
Changes: Source and taxonomy - Version 1.4: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
