2XZ3
BLV TM hairpin
- PDB DOI: https://doi.org/10.2210/pdb2XZ3/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Escherichia coli, Bovine leukemia virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-11-22 Released: 2011-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.237
- R-Value Work: 0.192
- R-Value Observed: 0.194
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MALTOSE ABC TRANSPORTER PERIPLASMIC PROTEIN, ENVELOPE GLYCOPROTEIN | 463 | Escherichia coli, Bovine leukemia virus This entity is chimeric | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9 Go to UniProtKB: P0AEX9 | |||||
Find proteins for Q90M13 (Bovine leukemia virus) Explore Q90M13 Go to UniProtKB: Q90M13 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | Q90M13P0AEX9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900001 Query on PRD_900001 | B | alpha-maltose | Oligosaccharide / Nutrient |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.237
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 107.595 | α = 90 |
| b = 107.595 | β = 90 |
| c = 119.17 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2011-03-02 Deposition Author(s): Schuettelkopf, A.W., Lamb, D., Brighty, D.W., van Aalten, D.M.F.
Revision History (Full details and data files)
- Version 1.0: 2011-03-02
Type: Initial release - Version 1.1: 2011-12-28
Changes: Database references, Version format compliance - Version 1.2: 2014-03-12
Changes: Source and taxonomy - Version 1.3: 2017-03-15
Changes: Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary - Version 2.1: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary
