Download MendeleyCrystal Structure of the Yersinia Pseudotuberculosis Superoxide Dismutase (Sodc)
Huyet, J., Naylor, C.E., Titball, R.W., Bullifent, H., Walker, N., Jones, H.E., Duffied, M.L., Basak, A.K.To be published.
2WWN
Yersinia pseudotuberculosis Superoxide Dismutase C with bound Azide
- PDB DOI: https://doi.org/10.2210/pdb2WWN/pdb
- Entry: 2WWN supersedes: 2WN1
- Classification: OXIDOREDUCTASE
- Organism(s): Yersinia pseudotuberculosis
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2009-10-26 Released: 2010-11-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.232
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SUPEROXIDE DISMUTASE [CU-ZN] | 169 | Yersinia pseudotuberculosis | Mutation(s): 0 EC: 1.15.1.1 |  | |
UniProt | |||||
Find proteins for Q66ED7 (Yersinia pseudotuberculosis serotype I (strain IP32953)) Explore Q66ED7 Go to UniProtKB: Q66ED7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q66ED7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | H [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| AZI Query on AZI | K [auth B], L [auth B] | AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.232
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 96.561 | α = 90 |
| b = 96.561 | β = 90 |
| c = 81.716 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2010-11-03 Deposition Author(s): Basak, A.K., Duffield, M.L., Naylor, C.E., Huyet, J., Titball, R.W.
- This entry supersedes: 2WN1
Revision History (Full details and data files)
- Version 1.0: 2010-11-03
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
