2WWA

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.

Becker, T.Bhushan, S.Jarasch, A.Armache, J.P.Funes, S.Jossinet, F.Gumbart, J.Mielke, T.Berninghausen, O.Schulten, K.Westhof, E.Gilmore, R.Mandon, E.Beckmann, R.

(2009) Science 326: 1369

  • DOI: https://doi.org/10.1126/science.1178535
  • Primary Citation of Related Structures:  
    2WW9, 2WWA, 2WWB

  • PubMed Abstract: 

    The trimeric Sec61/SecY complex is a protein-conducting channel (PCC) for secretory and membrane proteins. Although Sec complexes can form oligomers, it has been suggested that a single copy may serve as an active PCC. We determined subnanometer-resolution cryo-electron microscopy structures of eukaryotic ribosome-Sec61 complexes. In combination with biochemical data, we found that in both idle and active states, the Sec complex is not oligomeric and interacts mainly via two cytoplasmic loops with the universal ribosomal adaptor site. In the active state, the ribosomal tunnel and a central pore of the monomeric PCC were occupied by the nascent chain, contacting loop 6 of the Sec complex. This provides a structural basis for the activity of a solitary Sec complex in cotranslational protein translocation.


  • Organizational Affiliation

    Gene Center Munich and Center for Integrated Protein Science, Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SEC SIXTY-ONE PROTEIN HOMOLOG490Saccharomyces cerevisiaeMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN TRANSPORT PROTEIN SSS180Saccharomyces cerevisiaeMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN TRANSPORT PROTEIN SEB287Saccharomyces cerevisiaeMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L4-B362Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L17-A184Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L19189Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L25142Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L26-A127Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L31-A113Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L35120Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S RIBOSOMAL PROTEIN L3951Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 4
MoleculeChains LengthOrganismImage
25S RRNA63Saccharomyces cerevisiae
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Entity ID: 5
MoleculeChains LengthOrganismImage
25S RRNA34Saccharomyces cerevisiae
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Entity ID: 6
MoleculeChains LengthOrganismImage
25S RRNA25Saccharomyces cerevisiae
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Entity ID: 7
MoleculeChains LengthOrganismImage
25S RRNA18Saccharomyces cerevisiae
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-12-08
    Type: Initial release
  • Version 1.1: 2011-07-20
    Changes: Database references, Derived calculations, Other, Refinement description, Structure summary
  • Version 1.2: 2015-10-21
    Changes: Other
  • Version 1.3: 2017-04-19
    Changes: Other
  • Version 2.0: 2018-10-03
    Changes: Atomic model, Data collection, Derived calculations