2V70
Third LRR domain of human Slit2
- PDB DOI: https://doi.org/10.2210/pdb2V70/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2007-07-24 Released: 2007-08-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.01 Å
- R-Value Free: 0.271
- R-Value Work: 0.222
- R-Value Observed: 0.225
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SLIT HOMOLOG 2 PROTEIN N-PRODUCT | 220 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O94813 (Homo sapiens) Explore O94813 Go to UniProtKB: O94813 | |||||
PHAROS: O94813 GTEx: ENSG00000145147 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O94813 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | E [auth A], F [auth B], G [auth C], H [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.01 Å
- R-Value Free: 0.271
- R-Value Work: 0.222
- R-Value Observed: 0.225
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.65 | α = 90 |
| b = 96.86 | β = 95.32 |
| c = 87.15 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2007-08-28 Deposition Author(s): Morlot, C., Cusack, S., McCarthy, A.A.
Revision History (Full details and data files)
- Version 1.0: 2007-08-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary
