Download MendeleyCrystal Structure of Bacillus Cereus Sphingomyelinase Mutant : N57A
Oda, M., Tsuge, H., Sakurai, J.To be published.
2UYR
Crystal structure of Bacillus cereus sphingomyelinase mutant :N57A
- PDB DOI: https://doi.org/10.2210/pdb2UYR/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus cereus
- Expression System: Bacillus subtilis
- Mutation(s): Yes
- Deposited: 2007-04-12 Released: 2008-05-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.235
- R-Value Work: 0.182
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SPHINGOMYELINASE C | A [auth X] | 306 | Bacillus cereus | Mutation(s): 1 EC: 3.1.4.12 |  |
UniProt | |||||
Find proteins for P11889 (Bacillus cereus) Explore P11889 Go to UniProtKB: P11889 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11889 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth X] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.235
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.09 | α = 90 |
| b = 63.927 | β = 90 |
| c = 101.69 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CCP4I | phasing |
Entry History
Deposition Data
- Released Date: 2008-05-27 Deposition Author(s): Oda, M., Tsuge, H., Sakurai, J.
Revision History (Full details and data files)
- Version 1.0: 2008-05-27
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-04-04
Changes: Data collection - Version 1.4: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
