2RJO
Crystal structure of Twin-arginine translocation pathway signal protein from Burkholderia phytofirmans
- PDB DOI: https://doi.org/10.2210/pdb2RJO/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Paraburkholderia phytofirmans PsJN
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-10-15 Released: 2007-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.281
- R-Value Work: 0.234
- R-Value Observed: 0.234
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Twin-arginine translocation pathway signal protein | 332 | Paraburkholderia phytofirmans PsJN | Mutation(s): 0 Gene Names: BphytDRAFT_4841 |  | |
UniProt | |||||
Find proteins for B2TEP5 (Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)) Explore B2TEP5 Go to UniProtKB: B2TEP5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2TEP5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GAL Query on GAL | B [auth A] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.281
- R-Value Work: 0.234
- R-Value Observed: 0.234
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.197 | α = 90 |
| b = 51.504 | β = 90 |
| c = 138.757 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SHELXE | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-23 Deposition Author(s): Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-10-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2021-02-03
Changes: Database references, Structure summary
