Download MendeleyResidues substitution in the active site of DSBA may compensate for the lack of the canonical motif CPHC
Rinaldi, F.C., Guimaraes, B.G.To be published.
2REM
Crystal Structure of oxidoreductase DsbA from Xylella fastidiosa
- PDB DOI: https://doi.org/10.2210/pdb2REM/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Xylella fastidiosa
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-09-26 Released: 2008-10-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.224
- R-Value Work: 0.183
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Disulfide oxidoreductase | 193 | Xylella fastidiosa | Mutation(s): 0 Gene Names: XF1436 EC: 1.8.4.2 |  | |
UniProt | |||||
Find proteins for Q9PDE3 (Xylella fastidiosa (strain 9a5c)) Explore Q9PDE3 Go to UniProtKB: Q9PDE3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9PDE3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 8 residue peptide | D [auth T] | 8 | Xylella fastidiosa | Mutation(s): 0 |  |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.224
- R-Value Work: 0.183
- R-Value Observed: 0.185
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 200.117 | α = 90 |
| b = 41.722 | β = 95.87 |
| c = 79.807 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHARP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-10-07 Deposition Author(s): Rinaldi, F.C., Guimaraes, B.G.
Revision History (Full details and data files)
- Version 1.0: 2008-10-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Advisory, Refinement description - Version 1.3: 2024-02-21
Changes: Advisory, Data collection, Database references
