Download MendeleyThe crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens.
Zhang, R., Dong, A., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
2R9Q
Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb2R9Q/pdb
- Classification: HYDROLASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2007-09-13 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.269
- R-Value Work: 0.189
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2'-deoxycytidine 5'-triphosphate deaminase | 370 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: dcd, AGR_C_764, Atu0434 |  | |
UniProt | |||||
Find proteins for A9CKA1 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CKA1 Go to UniProtKB: A9CKA1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CKA1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Synthetic peptide 1 | E [auth X] | 7 | N/A | Mutation(s): 0 |  |
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Synthetic peptide 2 | F [auth Y] | 9 | N/A | Mutation(s): 0 |  |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.269
- R-Value Work: 0.189
- R-Value Observed: 0.190
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.693 | α = 90 |
| b = 129.042 | β = 108.75 |
| c = 85.559 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-02 Deposition Author(s): Zhang, R., Dong, A., Xu, X., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references
