Download MendeleyThe crystal structure of dihydrodipicolinate synthase (Atu0899) from Agrobacterium tumefaciens str. C58.
Tan, K., Dong, A., Xu, X., Gu, J., Zheng, H., Edwards, A.M., Savchenko, A., Joachimiak, A.To be published.
2R8W
The crystal structure of dihydrodipicolinate synthase (Atu0899) from Agrobacterium tumefaciens str. C58
- PDB DOI: https://doi.org/10.2210/pdb2R8W/pdb
- Classification: LYASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2007-09-11 Released: 2007-09-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.184
- R-Value Work: 0.158
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AGR_C_1641p | 332 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: AGR_C_1641 |  | |
UniProt | |||||
Find proteins for Q7D0E8 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7D0E8 Go to UniProtKB: Q7D0E8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7D0E8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A], F [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.184
- R-Value Work: 0.158
- R-Value Observed: 0.158
- Space Group: P 64
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.994 | α = 90 |
| b = 95.994 | β = 90 |
| c = 103.12 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MLPHARE | phasing |
| DM | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2007-09-25 Deposition Author(s): Tan, K., Dong, A., Xu, X., Gu, J., Zheng, H., Edwards, A.M., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-09-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
