Download MendeleyPlasmodium vivax guanylate kinase.
Le Trong, I., Merritt, E.A.To be published.
2QOR
Crystal structure of Plasmodium vivax guanylate kinase
- PDB DOI: https://doi.org/10.2210/pdb2QOR/pdb
- Classification: TRANSFERASE
- Organism(s): Plasmodium vivax
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-07-20 Released: 2007-08-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.227
- R-Value Work: 0.200
- R-Value Observed: 0.201
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanylate kinase | 204 | Plasmodium vivax | Mutation(s): 0 Gene Names: Pv099895, PVX_099895 EC: 2.7.4.8 |  | |
UniProt | |||||
Find proteins for A5K709 (Plasmodium vivax (strain Salvador I)) Explore A5K709 Go to UniProtKB: A5K709 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5K709 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5GP Query on 5GP | B [auth A] | GUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O8 P RQFCJASXJCIDSX-UUOKFMHZSA-N |  | ||
| POP Query on POP | C [auth A] | PYROPHOSPHATE 2- H2 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.227
- R-Value Work: 0.200
- R-Value Observed: 0.201
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.535 | α = 90 |
| b = 43.535 | β = 90 |
| c = 342.8 | γ = 120 |
| Software Name | Purpose |
|---|---|
| TRUNCATE | data reduction |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2007-08-07 Deposition Author(s): Merritt, E.A., Le Trong, I., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2007-08-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description
