2QLZ

Crystal Structure of Transcription Factor PF0095 from Pyrococcus furiosus

PDB DOI: https://doi.org/10.2210/pdb2QLZ/pdb

Classification: TRANSCRIPTION
Organism(s): Pyrococcus furiosus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-07-13 Released: 2008-07-29
Deposition Author(s): Yang, H., Lipscomb, G.L., Scott, R.A., Rose, J.P., Wang, B.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.271
R-Value Work: 0.226
R-Value Observed: 0.228

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Transcription Factor PF0095 from Pyrococcus furiosus

Yang, H., Lipscomb, G.L., Scott, R.A., Rose, J.P., Wang, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 109.19 kDa
Atom Count: 7,059
Modelled Residue Count: 868
Deposited Residue Count: 928
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription Factor PF0095	A, B, C, D	232	Pyrococcus furiosus	Mutation(s): 0
UniProt
Find proteins for Q8U4J2 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U4J2 Go to UniProtKB: Q8U4J2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8U4J2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.271
R-Value Work: 0.226
R-Value Observed: 0.228
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.132	α = 90
b = 174.699	β = 93.11
c = 52.249	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SERGUI	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-07-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-07-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.