Download MendeleyThe crystal structure of a protein of unknown function, VPA0982 from Vibrio parahaemolyticus RIMD 2210633.
Tan, K., Duggan, E., Moy, S., Joachimiak, A.To be published.
2QIP
Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633
- PDB DOI: https://doi.org/10.2210/pdb2QIP/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Vibrio parahaemolyticus RIMD 2210633
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2007-07-05 Released: 2007-07-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.48 Å
- R-Value Free: 0.183
- R-Value Work: 0.162
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein of unknown function VPA0982 | 165 | Vibrio parahaemolyticus RIMD 2210633 | Mutation(s): 2 Gene Names: VPA0982 |  | |
UniProt | |||||
Find proteins for Q9AF14 (Vibrio parahaemolyticus) Explore Q9AF14 Go to UniProtKB: Q9AF14 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9AF14 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.48 Å
- R-Value Free: 0.183
- R-Value Work: 0.162
- R-Value Observed: 0.163
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.207 | α = 90 |
| b = 75.034 | β = 90 |
| c = 80.418 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MLPHARE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2007-07-24 Deposition Author(s): Tan, K., Duggan, E., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-07-24
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
