Download MendeleyCrystal structure of Mannose-6-phosphate isomerase from Helicobacter pylori.
Patskovsky, Y., Ramagopal, U., Toro, R., Sauder, J.M., Iizuka, M., Dickey, M., Maletic, M., Wasserman, S.R., Koss, J., Burley, S.K., Almo, S.C.To be published.
2QH5
Crystal structure of mannose-6-phosphate isomerase from Helicobacter pylori
- PDB DOI: https://doi.org/10.2210/pdb2QH5/pdb
- Classification: ISOMERASE
- Organism(s): Helicobacter pylori 26695
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-06-29 Released: 2007-07-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289
- R-Value Work: 0.234
- R-Value Observed: 0.235
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mannose-6-phosphate isomerase | 308 | Helicobacter pylori 26695 | Mutation(s): 0 Gene Names: HP_0043 |  | |
UniProt | |||||
Find proteins for O24884 (Helicobacter pylori (strain ATCC 700392 / 26695)) Explore O24884 Go to UniProtKB: O24884 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O24884 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289
- R-Value Work: 0.234
- R-Value Observed: 0.235
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.829 | α = 90 |
| b = 66.415 | β = 90 |
| c = 163.959 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2007-07-17 Deposition Author(s): Patskovsky, Y., Ramagopal, U., Toro, R., Sauder, J.M., Dickey, M., Iizuka, M., Maletic, M., Wasserman, S.R., Koss, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-07-17
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2018-11-14
Changes: Data collection, Structure summary - Version 1.5: 2021-02-03
Changes: Database references, Structure summary - Version 1.6: 2024-02-21
Changes: Data collection, Database references, Refinement description
